Lots of Clean-up

I’m doing a lot of code clean-up and fixing the GitHub Repository. I am also adding the manual into GitHub although I am writing it in Scrivener. Up next is attempting to create a repository for my SQLite queries.

The model I am moving to for branching and development is described here:

a-successful-git-branching-model

Hopefully it will make the code a bit easier to understand for new people.